PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 245aa    MW: 26772.2 Da    PI: 6.723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739854genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.31.8e-312103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++  ++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++
  676739854   2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCAALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETV 101
                6***********************************************************************************************9998 PP

     DUF260  96 ll 97 
                l+
  676739854 102 LR 103
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2871107IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC  60
AALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRDGGF  120
GGFPSPTSDE ASEICTEMLN DSGDRNIYHH CRFSSSRSRS TASPPKRKRL ASEQQQQRPS  180
SSSELDLSLI PTFPIKTTPL KEETVRPETP SIYSEESDTT TSFPDNGERF LRGGGETTKL  240
LNLFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691297.11e-155PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-136LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM4F4P01e-154M4F4P0_BRARP; Uncharacterized protein
STRINGBra036040.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-121LOB domain-containing protein 38